Gut Check-

Nurturing Your Microbiome

20 MINUTE READ

Published June 2024

AUTHOR


Megan Lyons
Owner of Lyons’ Share Wellness, Double Board Certified as a Clinical Nutritionist and Holistic Nutritionist & Doctorate of Clinical Nutrition (Cand)


Your gut has been called your “second brain,” and is truly the pathway to strong emotional and physical health.  Find out more about how your microbiome impacts your metabolism, immunity, mental health, and so much more by reading this guide.

Your overall health starts in the gut

As parents, we’ve all dealt with plenty of dirty diapers and seen what comes out of the gut.  But have you ever wondered what happens inside the gut?  In recent years, the gut microbiome has emerged as a key player in our overall health and well-being, but this idea was known even 2,000 years ago when Hippocrates famously said, “all disease begins and ends in the gut.”

So what is the gut microbiome anyway? 

The microbiome is comprised of the 100 trillion microorganisms that live in our digestive tracts, and collectively they influence everything from immunity and metabolism to emotional health and energy levels. Understanding and nurturing your gut microbiome is crucial not just for your health, but for the health of your entire family.

This primer will provide you with a comprehensive overview of the gut microbiome, its vital functions, how it impacts the health of adults and children alike, and what you can do to improve the health of your microbiome.

Breaking it down

The gut microbiome, often referred to as our "second brain," is a bustling community of bacteria, viruses, fungi, and other microorganisms living in our digestive tract. These microbes play a pivotal role in maintaining our health by aiding digestion, producing essential nutrients, and protecting against harmful pathogens. The balance and diversity of these microorganisms are crucial for optimal health. We need a large variety of strains of bacteria for optimal health, but when the “bad” bacteria outnumber the “good,” we experience a condition called gut dysbiosis, which causes bloating, constipation, and/or diarrhea and ultimately leads to intestinal permeability or “leaky gut.”  So what factors influence our gut health? 

  • One of the most significant factors influencing the composition and diversity of the gut microbiome is diet. A diet high in processed foods, sugar, and unhealthy fats can promote the growth of harmful bacteria and disrupt the balance of the microbiome. Conversely, a diet rich in fiber, prebiotics, and fermented foods provides nourishment for beneficial bacteria, promoting a healthy and diverse microbiome. Fermented foods like yogurt, kefir, sauerkraut, and kimchi contain probiotics—live beneficial bacteria—that can help restore and maintain gut health. Adding a few of the above to your routine can have dramatic impact to your overall health.  Most people need a minimum of 1-2 servings per day for optimal health, but do what you can - even a few servings per week is a step in the right direction! 

  • The gut-brain axis, a bidirectional communication network between the gut and the brain, plays a crucial role in regulating stress responses and maintaining gut health. Chronic stress can disrupt this axis, leading to changes in gut motility, secretion, and permeability. These changes can alter the composition of the gut microbiome and contribute to conditions like irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), and gastrointestinal discomfort. Managing stress through techniques like mindfulness, meditation, exercise, and adequate sleep can support a healthy gut microbiome. Getting a few hours per week of additional downtime will meaningfully improve your overall level of stress, but start slowly.  If this is new to you, make a point to get 30 minutes per week this week, then when that feels doable, move on to an hour a week.  Ultimately, at least a few moments per day (every day) with a longer restoration period each week (like a long walk or manicure/pedicure) is a recipe for success.

  • While antibiotics are invaluable for treating bacterial infections, they can also have unintended consequences for the gut microbiome. Antibiotics not only kill harmful bacteria but can also disrupt the balance of beneficial bacteria in the gut. This disruption can lead to dysbiosis, increasing the risk of gastrointestinal symptoms, antibiotic-associated diarrhea, and opportunistic infections. All of this is a good reason to use them judiciously, follow prescribed dosages, and consider probiotic supplementation to restore microbial balance after antibiotic treatment.

  • Research suggests that the microbial composition of a mother's gut during pregnancy and breastfeeding can influence the development of her child's microbiome, impacting their immune system, metabolism, and risk of chronic diseases later in life. Whether your baby is born vaginally or via C-section, whether the baby is breast or bottle fed, and the foods they eat in the first 3 years of life all have dramatic impacts on their gut health throughout their entire life. This is not a reason to stress or judge yourself, but rather another reason to do what you can to maintain healthy gut practices throughout the home. Introducing your child to a broad range of foods including vegetables, fruits and fermented foods helps to establish that healthy microbiome and set your child up for lifetime of health.  By nurturing our own gut microbiome, we can positively impact the health trajectory of our entire family.

What the research says

Our gut health impacts more than just our digestion—it plays a crucial role in virtually every aspect of our health and well-being. From immunity and metabolism to emotional health and energy levels, the state of our gut microbiome influences how we feel, think, and function on a daily basis. A few of the most critical systems that our gut health influences:

🤢Digestion: The funny thing about the health of our gut microbiome is that some of us get symptoms that we associate with the gut (like bloating, constipation, and diarrhea) and some of us don’t.  Often, these digestive symptoms are a first sign of dysbiosis, and they start clueing us in that something may be off. Bloating, characterized by a feeling of fullness, discomfort, and abdominal distention, often occurs due to excess gas production or disturbances in gut motility. Diarrhea can result from various factors, including infections, food intolerances, and disruptions in the gut microbiome. Conversely, constipation, marked bowel movements happening less than once per day or difficulty passing stools, can stem from dehydration, dietary factors, or impaired gut transit. Understanding and addressing these symptoms are essential for maintaining gut health and overall well-being.

💪Immunity: 70-80% of our immune system resides in the gut. The gut microbiome helps in the development and function of our immune cells, training them to distinguish between harmful invaders and the body's own cells. This interaction is essential in preventing autoimmune diseases and managing inflammation. Studies have shown that a diverse gut microbiome can reduce the risk of allergies, asthma, and other immune-related conditions.

😋Metabolism: The gut microbiome helps break down complex carbohydrates, fibers, and proteins that our bodies cannot digest on their own. The byproducts of this digestion, such as short-chain fatty acids, play a role in regulating our metabolism, energy production, and fat storage. Research indicates that an imbalanced gut microbiome is linked to metabolic disorders like obesity and type 2 diabetes.

🧠Emotional Health: The gut-brain axis is a fascinating area of study, revealing the strong connection between our gut and our mental health. The gut microbiome produces neurotransmitters like serotonin and dopamine, which influence our mood, stress levels, and overall emotional well-being. In fact, 95% of the serotonin, sometimes called a “happy hormone,” is produced by gut bacteria, not in the brain! Disruptions in the gut microbiome have been associated with mental health conditions such as anxiety, depression, and even cognitive decline.

🚀Energy Levels: The efficiency of our gut microbiome in breaking down food directly affects our energy levels. A well-balanced microbiome optimizes nutrient absorption, ensuring that our bodies get the maximum benefit from the food we consume. Conversely, an imbalanced microbiome can lead to fatigue, nutrient deficiencies, and reduced stamina.

What good nutrition may look like for your child

  • Encourage variety in meals with fruits and veggies

    Make meals colorful and fun to encourage healthy eating habits - each color represents different nutrients that are good for the gut microbiome

  • Drink water with meals and throughout the day

    Offer water-rich foods like watermelon, cucumbers, and oranges as snacks

    Avoid sugary drinks like soda and juice; opt for water or fruit infused water instead

  • Limit intake of sugary snacks and drinks

    Swap fruits (applesauce or banana), honey, and/or coconut sugar as sweeteners in recipes

    Offer desserts made with healthier ingredients like whole grains and natural sweeteners (see our Balancing Extras guide for more!)

  • Offer yogurt, kefir, or fermented foods regularly, but introduce them gradually at first as they can be potent!

    Experiment with homemade fermented foods like kombucha or sauerkraut as a family

  • Actively teach your child how to relax and unwind by showing them the hobbies you enjoy for decompression (reading, walking, cooking, yoga, etc)

    Create a calm and supportive environment at home and ease your child’s mind by reminding them that you are always close by

    Remind your child how loved they are; delight in your child (see our Creating Strong Bonds guide)

    Teach stress management techniques like deep breathing or mindfulness. You can start this early and often by role-modeling what deep breaths look like. This is a great practice to incorporate in your bedtime routine to help your child develop self-regulation skills

    Implement a strong bedtime and nap routine to ensure your child is getting the sleep that they need developmentally (see our sleep guide).

  • Encourage outdoor play and active games

    Schedule family activities like hiking, biking, or swimming

    Limit screen time and encourage movement breaks throughout the day

What good nutrition may look like for you as an adult

  • Include fiber-rich foods like whole grains and legumes; limit processed foods

    Prioritize plant-based foods like fruits, vegetables, nuts, and seeds

    Reduce intake of added sugars and opt for natural sweeteners like stevia, honey, or maple syrup when needed

  • Aim for half of your bodyweight (in pounds) as a number of ounces of water to drink daily

    Carry a reusable water bottle to stay hydrated on the go

    Limit caffeine and alcohol consumption, as they can contribute to dehydration

  • Get in the habit of exploring food labels - you may be surprised by just how many of our most favorite snacks have loads of added sugars (like yogurts, bread, cereals, dressings, and bars). We want to aim for less than 25 grams of added sugar per day, so aiming for less than 5 grams of added sugar per item is a first step..

    Practice mindful eating with small portions of “extras” like candy, cookies, etc (see our Balancing Extras guide for more on how to include these in a healthy way!)

  • Incorporate probiotic-rich foods like yogurt, kefir, sauerkraut, and kimchi and/or

    Consider probiotic supplements if dietary sources are limited or during antibiotic treatment (See “Resources” for our favorite options!)

  • Actively practice your own self-care with stress-reducing activities like meditation, yoga, or deep breathing exercises

    Schedule regular self-care activities like massage, baths, date nights or reading

    Practice setting boundaries and saying no (it is a practice!) to reduce stress

    Take turns with your partner on less glamorous tasks - balance the load!

  • Aim for 30 minutes daily. If you’re not able to exercise on your own at this stage, this could involve running around after your kids at the playground, having a family dance party, adding ankle or arm weights to your usual family walk, gardening, or going for a walk after a meal

    Incorporate physical activity into daily routines, such as taking the stairs or walking to work

About the author


Megan Lyons

Doctor of Clinical Nutrition (cand), Board Certified Clinical and Holistic Nutritionist


As owner of her own wellness business, Megan has completed over 12,000 hours of 1-to-1 nutrition consulting, spoken on hundreds of stages, and reached hundreds of thousands through her…

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When to get
expert support

If you think you need expert support, this is a great reason to pop into office hours. Sometimes you might need more support, and that's okay!

  • If anyone in your family experiences ongoing symptoms such as chronic bloating, diarrhea, constipation, or abdominal pain that don't improve with dietary and lifestyle changes (intense abdominal pain, blood in stools, or unexplained weight loss, should seek medical attention).

  • If you suspect food allergies or intolerances (e.g. lactose, egg, nuts, etc)

  • If you or your child have taken antibiotics recently and are experiencing more than normal disruption / disturbances

  • If you have a family history of gastrointestinal disorders, auto-immune conditions, or other chronic health issues

  • If you are taking any medications consult your doctor before adding new supplements over the counter

Have a question for your coach?

Schedule time during their weekly office hours! We know not all questions come up on a schedule, which is why your coach is also available outside of the sessions included in your Learning Program.

    • Ferranti, E. P., Dunbar, S. B., Dunlop, A. L., & Corwin, E. J. (2014). 20 things you didn’t know about the human gut microbiome. The Journal of cardiovascular nursing. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191858/  

    • Laue, H. E., Coker, M. O., & Madan, J. C. (2022, March 7). The developing microbiome from birth to 3 years: The gut-brain axis and neurodevelopmental outcomes. Frontiers in pediatrics. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8936143/#

    • Vighi, G., Marcucci, F., Sensi, L., Di Cara, G., & Frati, F. (2008, September). Allergy and the gastrointestinal system. Clinical and experimental immunology. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515351/

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